PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_19DD13245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 196aa    MW: 22674.2 Da    PI: 8.9393
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_19DD13245.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.81.1e-1544123190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            ++Yn Y+ e+GF +r  ks+++  +g   ++++ C++ gk+++ +++         ++rt+C a++++ +++d+ w++ + +  HnHe
  Traes_3DL_19DD13245.1  44 DYYNLYSWECGFGIRYGKSRTN-VKGAKSMQELLCNCGGKPKKVNSS---------SSRTECPAMIRLLRTEDDGWYICEYRVSHNHE 121
                            69****************9998.7777999**********9987655.........9******************************9 PP

                   FAR1  89 la 90 
                            + 
  Traes_3DL_19DD13245.1 122 ML 123
                            85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1244123IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
LSLLCITMIL RVRRNFFEIT AFPNNIVVVP LMGLTFDSLG EAYDYYNLYS WECGFGIRYG  60
KSRTNVKGAK SMQELLCNCG GKPKKVNSSS SRTECPAMIR LLRTEDDGWY ICEYRVSHNH  120
EMLHTCAQKL HFPSHRHIDK YTRELVSQLR QNNVNLSKVY SIIGTFFGRI ENVPFTKRCL  180
RTLCAKLSRD QADEDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231466.15e-80PREDICTED: uncharacterized protein LOC104582684 isoform X1
TrEMBLW5D8711e-147W5D871_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.11e-78(Brachypodium distachyon)
STRINGBRADI2G27040.12e-79(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.18e-14FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]